SM Analysis
Shotgun Metagenomics Analysis ( Short-Read )
-Taxonomic profiling – Identification of microbial composition across domains (bacteria, archaea, viruses, etc.)
-Functional profiling – Analysis of metabolic pathways and gene family abundance
-Assembly-free and assembly-based strategies – Flexible approaches for both quick insights and in-depth genome reconstruction
-Metagenome-assembled genome (MAG) reconstruction – Generation of draft genomes from complex microbial communities
-Feature table generation – Abundance tables for taxonomic and functional annotations
-Phylogenetic tree construction – Inference of evolutionary relationships
-(Optional) Downstream analysis in R – Diversity metrics, statistical comparisons, and custom visualizations